no its not an issue, bots wont process the onclick javascript function.
for example, for the url below a bot would follow the "href" tag only, and a normal user would use the javascript call. if a user has javascript disabled then it would use the href tag instead.
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<a href="http://domain.com/DVD/2" onclick="ajaxUpdater('content','http://dev.associatesnichestore.com/DVD/2?mode=aj');return false;">2</a>